A Western blot template that adapts to your lab's workflow.

This Western blot template ships with a 10-step protocol, validated antibody dilutions, pre-wired antibody storage references, and structured fields for gel percentage, loading amount, and transfer parameters. Your lab edits the configuration to match the antibody pair you actually run, instead of building the scaffold from scratch every time.

western blot HER2 GAPDH breast cancer protein validation
Inside ELabELN

See exactly how the template loads in ELabELN.

This is the live ELabELN experiment view, the same screen your lab works in every day. Switch between a blank start and a fully populated example, then expand any section to see what the template pre-fills.

Template detail

What this Western blot template ships with.

This Western blot template ships configured for chemiluminescent detection (ECL) on standard imaging systems, with a 10-step protocol covering cell lysis through final image capture. The protocol assumes RIPA-based lysis with protease inhibitors, BCA protein quantification, 10% SDS-PAGE gel electrophoresis, semi-dry transfer to PVDF, 5% milk blocking, overnight primary antibody incubation at 4°C, HRP-conjugated secondary detection, and ECL chemiluminescent imaging.

Structured fields capture sample, gel and loading, and transfer and detection metadata in typed inputs (cell line, lysate concentration, gel percentage, micrograms per lane, primary antibody dilution, secondary antibody dilution, transfer method, blocking agent), so the values are queryable across blots instead of buried in free text. The lane assignment table supports technical triplicates for a HeLa vs SK-BR-3 reference comparison at HER2 (185 kDa) with GAPDH (37 kDa) as the loading control. Primary and secondary antibodies link to the ELabELN inventory so lot numbers, catalog references, validation status, and stock levels flow into the experiment record without manual entry.

The template is intended as a tested baseline for academic and life sciences research labs running protein-level validation of differential expression (such as Western blot confirmation of a qPCR result), pathway analysis, or routine target quantification. Configure the cell lines, swap the antibody pair, change the gel percentage, or adjust the transfer method to match the proteins your lab actually runs. ELabELN's tamper-evident audit trail captures every edit, every step check-off, and every electronic signature, so the resulting record is structured to support reproducibility documentation, multi-PI collaboration, and FDA 21 CFR Part 11 review when the lab's quality system requires it.

What's Included

Every ELN section, pre-populated for Western blot.

The template populates the existing ELabELN sections your lab already works with: Main Text, Extra Fields, Steps, Compounds, Links, and more. Your team edits instead of building from scratch.

Main Text

Protocol summary, antibody validation notes, and expected band sizes, written in the TinyMCE editor.

  • Objective + method scaffold
  • Antibody references with validation status
  • Linked to upstream lysate prep

Extra Fields

Ten structured, typed fields grouped by Sample, Gel & Loading, and Transfer & Detection.

  • Cell line, lysate prep reference
  • Gel %, μg per lane, antibody dilutions
  • Queryable across blots

Steps

Ten-step workflow checklist covering lysis through ECL detection.

  • Lyse, quantify, gel, transfer, detect
  • Each tick timestamped to audit trail
  • Imager run auto-logged

Compounds

Anti-HER2 and anti-GAPDH primary antibodies, HRP-conjugated secondaries, RIPA lysis buffer, and ECL substrate pre-linked from the compound database.

  • Lot numbers carried automatically
  • Antibody validation status inline
  • Low-stock warnings before run

Links & Resources

Pre-wired to your lab's SOPs, antibody database, and prior Western blot experiments.

  • Western Blot SOP v2.4
  • HER2 + GAPDH antibody entries
  • Upstream lysate experiment linked

Storage & Files

Antibody aliquot slots and lysate storage, plus gel image and densitometry attachments.

  • −20 °C antibody storage pre-filled
  • Attachment slots labelled
  • TIF + XLSX ready on save

Use this template for your next Western blot.

Edit the configuration to match your antibody pair, run the experiment from a tested baseline, and capture every step in a structured record. Browse other templates built for the workflows real labs actually use.

Included in every plan
Designed to support 21 CFR Part 11
Unlimited users on every plan
Built on 25+ years of LabLynx expertise
Frequently Asked

Common questions

Can I configure the template for my antibody pair?

Yes. Every section is editable. Swap in different primary antibodies, adjust dilutions, change the gel percentage or transfer method, or rearrange the lane layout. Save your edits as a private template scoped to your lab, or publish back to the ELabELN template library.

Does the template work with my imaging system?

The protocol is written for ECL chemiluminescence on standard imaging systems (ChemiDoc, LI-COR Odyssey, iBright, Azure). Fluorescent detection is supported by swapping the secondary antibodies to IRDye conjugates and adjusting the detection field. For instruments that use a different file format, the ELabELN team can map the export as part of onboarding.

How does the template handle band quantification?

The spreadsheet editor captures per-lane band intensity (raw and normalized to the loading control), with fold-change calculated automatically. Densitometry exports from ImageJ, Image Lab, or Empiria Studio can be pasted directly. The values are queryable across blots for cross-experiment comparison.

Is it included in every ELabELN plan?

Yes. Every published template in the ELabELN library is available to all ELabELN subscribers in both Standard and Suite editions, with unlimited users in either edition.

Can my whole lab use this template?

Yes. Every ELabELN edition includes unlimited users, so the PI, postdocs, grad students, rotating researchers, and visiting collaborators can all use the template without per-seat charges. Granular permissions let the PI control who can edit blots versus only review them.

How quickly can my lab start running blots in ELabELN?

ELabELN Standard cloud deployment is typically live in 1-2 days. Once the instance is provisioned, this template loads from the library in a single click, with the antibody references and SOPs editable to match the proteins your lab actually runs.