A gel electrophoresis template that adapts to your lab's fragments.

This gel electrophoresis template ships with a 10-step agarose protocol, validated buffer + ladder references, pre-wired voltage and run-time fields, and structured inputs for sample identity, expected fragment size, observed bands, and stain. Your lab edits the configuration to match the samples and fragment range you actually resolve, instead of rewriting the gel setup every time.

agarose gel restriction digest EcoRI-BamHI clone screening pUC19-GFP
Inside ELabELN

See exactly how the template loads in ELabELN.

This is the live ELabELN experiment view, the same screen your lab works in every day. Switch between a blank start and a fully populated example, then expand any section to see what the template pre-fills.

Template detail

What this gel electrophoresis template ships with.

This gel electrophoresis template ships configured for diagnostic restriction-digest verification of a pUC19-GFP cloning intermediate using an EcoRI + BamHI double digest, with a 10-step protocol covering gel casting through UV imaging and per-clone scoring. The protocol assumes a 1.2% agarose gel in TAE buffer with SYBR Safe stain, 100 V for 50 minutes on a Mini-Sub Cell GT or equivalent rig, a 1 kb Plus DNA Ladder reference, and an 8-lane layout: ladder + 6 clones + undigested control.

Structured fields capture gel, run, and result metadata in typed inputs (agarose concentration, buffer system, voltage, run time, stain, ladder identity, expected fragment sizes, per-lane observed bands), so gel parameters are queryable across runs instead of buried in free text. The agarose, buffer, ladder, and stain link to the ELabELN inventory so lot numbers and recipe references flow into every gel record without manual entry. The spreadsheet editor captures per-lane scoring (clone ID, expected vs observed bands, score, downstream call) for cross-clone selection.

The template is intended as a tested baseline for academic and life sciences research labs running gel electrophoresis for PCR product verification, restriction-digest screening, ligation checks, RNA quality assessment, or DNA fragment isolation. Configure the agarose percentage, swap the buffer system (TAE vs TBE), change the voltage and run time, adjust the stain (SYBR Safe, GelRed, EtBr), or move from analytical to preparative by editing the gel and sample sections. ELabELN's tamper-evident audit trail captures every gel run, every imaged result, and every clone-selection decision, so the resulting record supports cloning provenance documentation, multi-PI collaboration, and FDA 21 CFR Part 11 review when the lab's quality system requires it.

What's Included

Every ELN section, pre-populated for gel electrophoresis.

The template populates the existing ELabELN sections your lab already works with: Main Text, Extra Fields, Steps, Compounds, Links, and more. Your team edits instead of building from scratch.

Main Text

Gel objective, sample layout notes, and expected band pattern, written in the TinyMCE editor.

  • Objective + gel scaffold
  • Expected fragment sizes inline
  • Linked to upstream digest

Extra Fields

Ten structured, typed fields grouped by Gel, Run, and Scoring.

  • Agarose %, buffer, ladder
  • Voltage, run time, stain
  • Queryable across runs

Steps

Ten-step workflow checklist covering gel casting through imaging.

  • Cast, set up, load, run
  • Each tick timestamped
  • Imager run auto-logged

Compounds

Agarose, TAE buffer, SYBR Safe stain, DNA ladder, and loading dye pre-linked from the compound database.

  • Lot numbers carried automatically
  • Stain expiry inline
  • Low-stock warnings before run

Links & Resources

Pre-wired to your lab's gel SOPs, ladder reference image, and digest setup for this run.

  • Gel Electrophoresis SOP v2.4
  • 1 kb Plus ladder reference
  • Digest setup linked

Storage & Files

Stain working-stock storage, gel image attachments, and per-lane scoring sheets.

  • 4 °C stain storage pre-filled
  • Attachment slots labelled
  • TIF + CSV ready on save

Use this template for your next gel.

Edit the configuration to match your samples and expected fragments, run the gel from a tested baseline, and capture every lane in a structured record. Browse other templates built for the workflows real labs actually use.

Included in every plan
Designed to support 21 CFR Part 11
Unlimited users on every plan
Built on 25+ years of LabLynx expertise
Frequently Asked

Common questions

Can I configure the template for my samples and fragment range?

Yes. Every section is editable. Adjust the agarose percentage (0.7% for >5 kb, 1% for routine, 2-3% for <500 bp), swap the buffer system (TAE for routine, TBE for higher resolution), change the stain (SYBR Safe, GelRed, EtBr), adjust voltage and run time, or move from analytical to preparative by editing the gel and sample sections. Save your edits as a private template scoped to your lab, or publish back to the ELabELN template library.

How does the template differ from the PCR template's gel verification?

The PCR template includes gel verification as the final step of an amplification workflow. This template treats gel electrophoresis as the primary readout for a broader range of applications: restriction-digest screening, ligation checks, RNA quality assessment, fragment isolation. Use the PCR template when the gel is downstream of an amplification; use this template for standalone gel analysis.

Does the template handle per-lane scoring across clones?

Yes. The spreadsheet editor captures clone ID, expected vs observed bands per lane, and a pass/fail score, supporting clone-selection workflows. Per-lane structured scoring is the difference between "the digest looks OK" and a queryable record showing which 4 of 6 clones passed and which 2 had partial digestion.

Is it included in every ELabELN plan?

Yes. Every published template in the ELabELN library is available to all ELabELN subscribers, with unlimited users.

Can my whole lab use this template?

Yes. ELabELN includes unlimited users, so the PI, postdocs, grad students, rotating researchers, and visiting collaborators can all use the template without per-seat charges. Granular permissions let the PI control who can edit gel runs versus only review them.

How quickly can my lab start running gels in ELabELN?

ELabELN Standard cloud deployment is typically live in 1-2 days. Once the instance is provisioned, this template loads from the library in a single click, with the agarose percentage, buffer, voltage, and ladder editable to match the gels your lab actually runs.