A bacterial transformation template that adapts to your lab's plasmids.

This bacterial transformation template ships with a 10-step protocol, validated competent cell references, pre-wired antibiotic selection fields, and structured inputs for plasmid identity, heat-shock parameters, recovery time, and transformation efficiency. Your lab edits the configuration to match the construct and strain you actually run, instead of rewriting the scaffold every time a new student or postdoc clones a plasmid.

transformation cloning DH5α pUC19 amp selection
Inside ELabELN

See exactly how the template loads in ELabELN.

This is the live ELabELN experiment view, the same screen your lab works in every day. Switch between a blank start and a fully populated example, then expand any section to see what the template pre-fills.

Template detail

What this bacterial transformation template ships with.

This bacterial transformation template ships configured for heat-shock transformation of chemically competent E. coli (DH5α) with a high-copy cloning vector, using ampicillin selection on LB agar plates. The 10-step protocol covers thawing competent cells on ice, adding plasmid DNA, the 30-minute incubation, the 42°C heat shock, recovery in SOC at 37°C, plating dilutions, overnight incubation, and the next-day colony count and pick.

Structured fields capture sample, transformation conditions, and recovery and plating metadata in typed inputs (competent cell strain, plasmid identity and concentration, antibiotic and concentration, heat-shock time and temperature, recovery medium and time, plating volume, blue/white screening reagents), so the values are queryable across transformations instead of buried in free text. Plasmids and competent cells link to the ELabELN inventory so lot numbers, glycerol stock locations, antibiotic resistance markers, and stock levels flow into the experiment record without manual entry. The spreadsheet editor records the per-plate colony count, transformation efficiency in CFU per microgram of input DNA, and the colony picks selected for downstream verification.

The template is intended as a tested baseline for academic and life sciences research labs running molecular cloning, plasmid amplification, expression construct preparation, or any workflow that introduces foreign DNA into a bacterial host. Configure the strain, swap the plasmid, change the selection marker, or adjust the heat-shock and recovery parameters to match the construct your lab actually runs. ELabELN's tamper-evident audit trail captures every edit, every step check-off, and every electronic signature, so the resulting record supports reproducibility documentation, multi-PI collaboration on shared cloning projects, and FDA 21 CFR Part 11 review when the lab's quality system requires it.

What's Included

Every ELN section, pre-populated for bacterial transformation.

The template populates the existing ELabELN sections your lab already works with: Main Text, Extra Fields, Steps, Compounds, Links, and more. Your team edits instead of building from scratch.

Main Text

Protocol summary, plasmid and strain notes, and expected transformation efficiency range, written in the TinyMCE editor.

  • Objective + method scaffold
  • Plasmid map link + strain notes
  • Linked to upstream plasmid prep

Extra Fields

Ten structured, typed fields grouped by Sample, Transformation, and Recovery & Plating.

  • Strain, plasmid, DNA amount
  • Heat-shock time + temp, recovery min
  • Queryable across transformations

Steps

Ten-step workflow checklist covering competent cell thaw through next-day colony count.

  • Thaw, add DNA, shock, recover
  • Each tick timestamped to audit trail
  • Overnight gap auto-tracked

Compounds

Competent cells, plasmid stock, ampicillin, SOC medium, and blue/white screen reagents pre-linked from the compound database.

  • Lot numbers carried automatically
  • Strain competency status inline
  • Low-stock warnings before run

Links & Resources

Pre-wired to your lab's cloning SOPs, plasmid map, and upstream/downstream experiments.

  • Transformation SOP v1.3
  • pUC19-GFP plasmid map
  • Upstream miniprep linked

Storage & Files

Competent cell aliquot slots and glycerol stock storage, plus plate photos and colony pick records.

  • -80 °C competent cell storage
  • Glycerol stock slots labelled
  • JPG + CSV ready on save

Use this template for your next transformation.

Edit the configuration to match your strain and plasmid, run the experiment from a tested baseline, and capture every step in a structured record. Browse other templates built for the workflows real labs actually use.

Included in every plan
Designed to support 21 CFR Part 11
Unlimited users on every plan
Built on 25+ years of LabLynx expertise
Frequently Asked

Common questions

Can I configure the template for my strain and plasmid?

Yes. Every section is editable. Swap in different competent cell strains (TOP10, BL21, JM109, Stbl3), change the plasmid identity, switch the selection marker (kanamycin, chloramphenicol, spectinomycin, tetracycline) and its concentration, or adjust the heat-shock and recovery parameters. Save your edits as a private template scoped to your lab, or publish back to the ELabELN template library.

Does the template work with electroporation as well as heat shock?

The protocol ships configured for heat-shock transformation of chemically competent cells. For electroporation, the transformation step is editable to capture pulse voltage, cuvette gap, and electroporator model, and the surrounding sample, recovery, and plating sections work the same way. Both transformation methods feed into the same colony count and efficiency tracking downstream.

How does the template track transformation efficiency over time?

The spreadsheet editor captures input DNA amount, plated volume, colony count, and the calculated efficiency in CFU per microgram. Because the typed fields are queryable across transformations, your lab can pull every transformation that used a specific competent cell lot or plasmid prep and compare efficiency, supporting decisions about when to remake competent cells or revisit a problematic plasmid prep.

Is it included in every ELabELN plan?

Yes. Every published template in the ELabELN library is available to all ELabELN subscribers in both Standard and Suite editions, with unlimited users in either edition.

Can my whole lab use this template?

Yes. Every ELabELN edition includes unlimited users, so the PI, postdocs, grad students, rotating researchers, and visiting collaborators can all use the template without per-seat charges. Granular permissions let the PI control who can edit cloning experiments versus only review them.

How quickly can my lab start cloning in ELabELN?

ELabELN Standard cloud deployment is typically live in 1-2 days. Once the instance is provisioned, this template loads from the library in a single click, with the strain, plasmid, and selection references editable to match the constructs your lab actually runs.